嗨，我不认为我的Samtools安装是正确的。
首先我不认为我有zlib，我不知道如何安装它，以便samtools将看到它。 我认为Samtools需要zlib？
我受限制，我只能写文件到/ mnt / galaxyData，所以我不能做任何系统范围的安装。
这是我到目前为止所尝试的。 任何帮助是极大的赞赏。
ubuntu@ip-10-88-28-88:/mnt/galaxyData/custom$ cd downloads/ ubuntu@ip-10-88-28-88:/mnt/galaxyData/custom/downloads$ wget http://downloads.sourceforge.net/project/samtools/samtools/0.1.9/samtools-0.1.9.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fsamtools%2Ffiles%2Fsamtools%2F0.1.9%2F&ts=1326486279&use_mirror=voxel ubuntu@ip-10-88-28-88:/mnt/galaxyData/custom/downloads$ mv samtools-0.1.9.tar.bz2\?r\=http\:%2F%2Fsourceforge.net%2Fprojects%2Fsamtools%2Ffiles%2Fsamtools%2F0.1.9%2F samtools-0.1.9.tar.bz2 ubuntu@ip-10-88-28-88:/mnt/galaxyData/custom/downloads$ tar jxvf samtools-0.1.9.tar.bz2 ubuntu@ip-10-88-28-88:/mnt/galaxyData/custom/downloads$ cd samtools-0.1.9/ ubuntu@ip-10-88-28-88:/mnt/galaxyData/custom/downloads/samtools-0.1.9$ make razip gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -D_CURSES_LIB=1 -I. razip.c -o razip.o razip.c: In function 'main': razip.c:131:10: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] razip.c: In function 'write_open': razip.c:32:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -D_CURSES_LIB=1 -I. razf.c -o razf.o razf.c: In function 'razf_close': razf.c:804:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] razf.c:805:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] razf.c:808:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] razf.c:810:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] razf.c: In function 'razf_end_flush': razf.c:258:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] razf.c: In function '_razf_write': razf.c:201:8: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] razf.c: In function 'save_zindex': razf.c:96:17: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] razf.c:99:8: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] razf.c:106:7: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] razf.c:107:7: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] razf.c: In function 'razf_flush': razf.c:221:8: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] razf.c:234:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -D_CURSES_LIB=1 -I. knetfile.c -o knetfile.o knetfile.c: In function 'khttp_connect_file': knetfile.c:416:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] knetfile.c: In function 'kftp_send_cmd': knetfile.c:237:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] gcc -g -Wall -O2 -o razip razf.o razip.o knetfile.o -lz ubuntu@ip-10-88-28-88:/mnt/galaxyData/custom/downloads/samtools-0.1.9$ ls -l total 1008 -rw-r--r-- 1 ubuntu ubuntu 916 2010-07-12 02:41 AUTHORS -rw-r--r-- 1 ubuntu ubuntu 5226 2010-10-28 02:48 bam2bcf.c -rw-r--r-- 1 ubuntu ubuntu 860 2010-10-28 02:48 bam2bcf.h -rw-r--r-- 1 ubuntu ubuntu 4099 2010-07-12 02:41 bam_aux.c -rw-r--r-- 1 ubuntu ubuntu 10665 2010-10-28 02:48 bam.c -rw-r--r-- 1 ubuntu ubuntu 2803 2010-07-12 02:41 bam_color.c -rw-r--r-- 1 ubuntu ubuntu 1064 2010-07-12 02:41 bam_endian.h -rw-r--r-- 1 ubuntu ubuntu 24002 2010-10-28 02:48 bam.h -rw-r--r-- 1 ubuntu ubuntu 14553 2010-07-12 02:41 bam_import.c -rw-r--r-- 1 ubuntu ubuntu 20659 2010-10-28 02:48 bam_index.c -rw-r--r-- 1 ubuntu ubuntu 4976 2010-07-12 02:41 bam_lpileup.c -rw-r--r-- 1 ubuntu ubuntu 20595 2010-10-28 02:48 bam_maqcns.c -rw-r--r-- 1 ubuntu ubuntu 1486 2010-10-28 02:48 bam_maqcns.h -rw-r--r-- 1 ubuntu ubuntu 2540 2010-07-12 02:41 bam_mate.c -rw-r--r-- 1 ubuntu ubuntu 9096 2010-10-28 02:48 bam_md.c -rw-r--r-- 1 ubuntu ubuntu 12070 2010-10-28 02:48 bam_pileup.c -rw-r--r-- 1 ubuntu ubuntu 28030 2010-10-28 02:48 bam_plcmd.c -rw-r--r-- 1 ubuntu ubuntu 1465 2010-07-12 02:41 bam_reheader.c -rw-r--r-- 1 ubuntu ubuntu 5631 2010-07-12 02:41 bam_rmdup.c -rw-r--r-- 1 ubuntu ubuntu 4127 2010-07-12 02:41 bam_rmdupse.c -rw-r--r-- 1 ubuntu ubuntu 12370 2010-10-28 02:48 bam_sort.c -rw-r--r-- 1 ubuntu ubuntu 2688 2010-07-12 02:41 bam_stat.c -rw-r--r-- 1 ubuntu ubuntu 5215 2010-10-28 02:48 bamtk.c -rw-r--r-- 1 ubuntu ubuntu 12761 2010-10-28 02:48 bam_tview.c drwxr-xr-x 2 ubuntu ubuntu 4096 2012-01-13 20:25 bcftools -rw-r--r-- 1 ubuntu ubuntu 18806 2010-10-28 02:48 bgzf.c -rw-r--r-- 1 ubuntu ubuntu 4599 2010-07-12 02:41 bgzf.h -rw-r--r-- 1 ubuntu ubuntu 5903 2010-10-28 02:48 bgzip.c -rw-r--r-- 1 ubuntu ubuntu 168011 2010-10-28 02:48 ChangeLog -rw-r--r-- 1 ubuntu ubuntu 1085 2010-07-12 02:41 COPYING -rw-r--r-- 1 ubuntu ubuntu 3485 2010-10-28 02:48 errmod.c -rw-r--r-- 1 ubuntu ubuntu 317 2010-10-28 02:48 errmod.h drwxr-xr-x 2 ubuntu ubuntu 130 2012-01-13 20:25 examples -rw-r--r-- 1 ubuntu ubuntu 10271 2010-07-12 02:41 faidx.c -rw-r--r-- 1 ubuntu ubuntu 3188 2010-07-12 02:41 faidx.h -rw-r--r-- 1 ubuntu ubuntu 5931 2010-07-12 02:41 glf.c -rw-r--r-- 1 ubuntu ubuntu 1799 2010-07-12 02:41 glf.h -rw-r--r-- 1 ubuntu ubuntu 1003 2010-07-12 02:41 INSTALL -rw-r--r-- 1 ubuntu ubuntu 19312 2010-10-28 02:48 kaln.c -rw-r--r-- 1 ubuntu ubuntu 1974 2010-10-28 02:48 kaln.h -rw-r--r-- 1 ubuntu ubuntu 16522 2010-07-12 02:41 khash.h -rw-r--r-- 1 ubuntu ubuntu 3472 2010-07-12 02:41 klist.h -rw-r--r-- 1 ubuntu ubuntu 18226 2010-07-12 02:41 knetfile.c -rw-r--r-- 1 ubuntu ubuntu 1611 2010-07-12 02:41 knetfile.h -rw-rw-r-- 1 ubuntu ubuntu 41368 2012-01-13 20:34 knetfile.o -rw-r--r-- 1 ubuntu ubuntu 8108 2010-07-12 02:41 kseq.h -rw-r--r-- 1 ubuntu ubuntu 10027 2010-10-28 02:48 ksort.h -rw-r--r-- 1 ubuntu ubuntu 5186 2010-10-28 02:48 kstring.c -rw-r--r-- 1 ubuntu ubuntu 2641 2010-10-28 02:48 kstring.h -rw-r--r-- 1 ubuntu ubuntu 2670 2010-10-28 02:48 Makefile -rw-r--r-- 1 ubuntu ubuntu 1592 2010-07-12 02:41 Makefile.mingw drwxr-xr-x 2 ubuntu ubuntu 4096 2012-01-13 20:25 misc -rw-r--r-- 1 ubuntu ubuntu 14319 2010-10-28 02:48 NEWS -rw-r--r-- 1 ubuntu ubuntu 24343 2010-07-12 02:41 razf.c -rw-r--r-- 1 ubuntu ubuntu 4137 2010-07-12 02:41 razf.h -rw-rw-r-- 1 ubuntu ubuntu 49912 2012-01-13 20:34 razf.o -rwxrwxr-x 1 ubuntu ubuntu 84056 2012-01-13 20:34 razip -rw-r--r-- 1 ubuntu ubuntu 4110 2010-10-28 02:48 razip.c -rw-rw-r-- 1 ubuntu ubuntu 36360 2012-01-13 20:34 razip.o -rw-r--r-- 1 ubuntu ubuntu 5503 2010-07-12 02:41 sam.c -rw-r--r-- 1 ubuntu ubuntu 2625 2010-07-12 02:41 sam.h -rw-r--r-- 1 ubuntu ubuntu 19200 2010-07-12 02:41 sam_header.c -rw-r--r-- 1 ubuntu ubuntu 643 2010-07-12 02:41 sam_header.h -rw-r--r-- 1 ubuntu ubuntu 2500 2010-10-28 02:48 sample.c -rw-r--r-- 1 ubuntu ubuntu 396 2010-10-28 02:48 sample.h -rw-r--r-- 1 ubuntu ubuntu 18877 2010-10-28 02:48 samtools.1 -rw-r--r-- 1 ubuntu ubuntu 25286 2010-10-28 02:48 samtools.txt -rw-r--r-- 1 ubuntu ubuntu 9526 2010-10-28 02:48 sam_view.c drwxr-xr-x 2 ubuntu ubuntu 49 2010-07-12 02:41 win32 这是你需要另外安装的东西：
$ sudo yum install zlib-devel
如果它出来并抛出missing curses.h在你身上，也安装：
$ sudo yum install ncurses-devel ncurses